Job Summary:
We are seeking a Cloud Bioinformatics & Nextflow Engineer to design, build, and operate production-grade bioinformatics workflows for large-scale spatial multi-omics, single-cell, and high-throughput sequencing datasets. This role combines hands-on Nextflow engineering, Python software development, bioinformatics expertise, and AWS cloud engineering. The successful candidate will create scalable, reproducible, cost-aware pipelines that use AWS Batch and EC2 for elastic compute, Amazon S3 for durable object storage, and Amazon EFS for shared high-performance workflow storage. The engineer will partner with scientists, data engineers, platform teams, and security stakeholders to convert complex analytical requirements into reliable cloud-native solutions.

Responsibilities:
Nextflow Engineering: Architect, develop, test, and maintain modular Nextflow DSL2 pipelines and reusable components for large-scale spatial transcriptomics, scRNA-Seq, multi-omics, and other sequencing workloads.
Large-Scale Data Processing: Optimize workflow parallelism, task partitioning, retries,



checkpointing, caching, and resource allocation to process terabyte-scale datasets efficiently and reliably.
AWS Cloud Engineering: Design and operate Nextflow execution patterns on AWS Batch and EC2, including compute environments, job queues, launch templates, instance selection, autoscaling, Spot and On-Demand capacity strategies, and failure recovery.
Cloud Storage Architecture: Engineer secure and performant data movement and storage patterns across Amazon S3 and Amazon EFS, including staging, lifecycle management, throughput optimization, metadata handling, and management of intermediate workflow files.
Python Engineering: Develop production-quality Python packages, command-line tools, APIs, validation utilities, and automation used by bioinformatics workflows. Apply unit testing, type hints, structured logging, packaging, and code-quality standards.
Spatial Transcriptomics Expertise

📌 Cloud Bioinformatics (India)
🏢 System Soft Technologies
📍 India