Job Summary:
• We are seeking a Cloud Bioinformatics & Nextflow Engineer to design, build, and operate production-grade bioinformatics workflows for large-scale spatial multi-omics, single-cell, and high-throughput sequencing datasets. This role combines hands-on Nextflow engineering, Python software development, bioinformatics expertise, and AWS cloud engineering. The successful candidate will create scalable, reproducible, cost-aware pipelines that use AWS Batch and EC2 for elastic compute, Amazon S3 for durable object storage, and Amazon EFS for shared high-performance workflow storage. The engineer will partner with scientists, data engineers, platform teams, and security stakeholders to convert complex analytical requirements into reliable cloud-native solutions.

Responsibilities:
• Nextflow Engineering: Architect, develop, test, and maintain modular Nextflow DSL2 pipelines and reusable components for large-scale spatial transcriptomics, scRNA-Seq, multi-omics, and other sequencing workloads.
• Large-Scale Data Processing: Optimize workflow parallelism, task partitioning,



retries, checkpointing, caching, and resource allocation to process terabyte-scale datasets efficiently and reliably.
• AWS Cloud Engineering: Design and operate Nextflow execution patterns on AWS Batch and EC2, including compute environments, job queues, launch templates, instance selection, autoscaling, Spot and On-Demand capacity strategies, and failure recovery.
• Cloud Storage Architecture: Engineer secure and performant data movement and storage patterns across Amazon S3 and Amazon EFS, including staging, lifecycle management, throughput optimization, metadata handling, and management of intermediate workflow files.
• Python Engineering: Develop production-quality Python packages, command-line tools, APIs, validation utilities, and automation used by bioinformatics workflows. Apply unit testing, type hints, structured logging, packaging, and code-quality standards.
• Spatial Transcripto

📌 Cloud Bioinformatics (India)
🏢 System Soft Technologies
📍 India